Simply run truncate query
truncate table if exists table_name;
If what you are asking is how to create an ETL that incorporate the AWS Glue job with running query on Snowflake that is depended on the ETL tool that you use and what it can do. That however is a question for the ETL tool that you are using.
i can suggest using Apache Airflow which can schedule Glue jobs and run Snowflake queries.
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